Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1221

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9588 and 9589 are separated by 325 nucleotides9589 and 9590 are separated by 294 nucleotides mRNA_1220: 9588 - KOG0254 Predicted transporter (major facilitator superfamily), at 676,707 to 679,515 9588 mRNA_1221: 9589 - K01810 GPI, pgi glucose-6-phosphate isomerase, at 679,841 to 682,126 9589 mRNA_1222: 9590 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 682,421 to 686,506 9590

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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678,921 + 9588 mRNA_1220 0.79 -2.3
679,053 - 9588 mRNA_1220 0.84 -0.5
679,070 + 9588 mRNA_1220 0.84 +0.2
679,177 - 9588 mRNA_1220 0.88 +1.0
679,192 + 9588 mRNA_1220 0.88 -0.3
679,330 + +0.8
679,365 - +2.5
679,672 + +0.7
679,769 - -0.6
679,770 - +0.4
679,774 - +0.1
679,781 - +1.1
679,791 - -0.7
682,145 + -0.6
682,446 + -0.2
682,646 + +0.8
682,646 - +0.3

Or see this region's nucleotide sequence