Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1224

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9591 and 9592 are separated by 201 nucleotides9592 and 9593 are separated by 146 nucleotides mRNA_1223: 9591 - PRINTS-Proline rich extensin signature-PR01217, at 687,384 to 689,890 9591 mRNA_1224: 9592 - BLAST catalytic [Ascochyta rabiei], at 690,092 to 691,295 9592 mRNA_1225: 9593 - KOG2195 Transferrin receptor and related proteins containing the protease-associated (PA) domain, at 691,442 to 693,362 9593

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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689,807 + +1.6
689,863 - +0.3
689,959 + +0.1
689,968 + +0.7
689,968 - +0.6
689,972 + -0.1
690,032 + -0.3
690,045 + +0.9
690,189 + -0.1
690,304 + 9592 mRNA_1224 0.18 +0.1
690,320 + 9592 mRNA_1224 0.19 +1.2
690,324 + 9592 mRNA_1224 0.19 +1.8
690,457 + 9592 mRNA_1224 0.30 -1.8
690,466 - 9592 mRNA_1224 0.31 -1.0
690,594 - 9592 mRNA_1224 0.42 +1.5
690,760 - 9592 mRNA_1224 0.55 +0.9
691,480 + +1.3
691,775 - 9593 mRNA_1225 0.17 -0.1
691,821 - 9593 mRNA_1225 0.20 -0.2
692,070 + 9593 mRNA_1225 0.33 -0.0
692,201 - 9593 mRNA_1225 0.40 -0.2

Or see this region's nucleotide sequence