Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1228

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9595 and 9596 are separated by 544 nucleotides9596 and 9597 are separated by 347 nucleotides mRNA_1227: 9595 - KOG1318 Helix loop helix transcription factor EB, at 696,629 to 699,042 9595 mRNA_1228: 9596 - K00693 GYS glycogen synthase, at 699,587 to 703,104 9596 mRNA_1229: 9597 - SUPERFAMILY--SSF52047, at 703,452 to 704,884 9597

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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699,044 - +1.3
699,135 + -0.8
699,138 + +1.6
699,169 + -0.8
699,250 - -0.1
699,253 - -0.3
699,262 + -1.1
699,263 + -0.3
699,263 - -1.3
699,278 + +0.2
699,326 - -0.3
699,346 + +0.6
699,356 - +0.3
699,358 - -0.1
699,368 - +0.3
699,377 + -0.1
699,379 + +1.3
699,389 - +2.8
699,409 - -0.5
699,409 + -0.7
699,423 - +0.3
699,423 - -0.3
699,425 - +0.3
699,432 - +0.5
699,449 - +0.1
699,473 + +0.4
699,475 + +0.5
699,476 - +0.2
699,487 + +0.3
699,487 - -0.5
699,502 + -0.6
699,504 + -0.0
699,519 - +1.1
699,520 - -1.5
699,531 - +0.1
699,533 - +0.3
699,534 + -0.0
699,669 + +0.4
699,671 + +0.5
699,677 + +2.3
699,684 + +0.3
699,691 + +1.1
699,698 + +1.0
699,828 + +0.4
699,831 - -1.0
699,831 - +1.5
699,834 - +1.3
700,568 + 9596 mRNA_1228 0.28 -0.3
700,722 - 9596 mRNA_1228 0.32 +0.0
701,166 + 9596 mRNA_1228 0.45 +0.1
701,288 - 9596 mRNA_1228 0.48 +3.1
701,323 - 9596 mRNA_1228 0.49 +0.4
701,829 - 9596 mRNA_1228 0.64 +0.7
702,187 - 9596 mRNA_1228 0.74 +0.0
702,191 + 9596 mRNA_1228 0.74 +1.7
702,200 - 9596 mRNA_1228 0.74 +1.3
702,207 - 9596 mRNA_1228 0.74 +0.7
702,209 + 9596 mRNA_1228 0.75 +0.7
702,763 - -0.9
702,787 + -0.0
703,072 - -0.3
703,125 - +1.9
703,323 + -1.5
703,326 - -2.8
703,650 - 9597 mRNA_1229 0.14 +1.1
704,070 + 9597 mRNA_1229 0.43 -0.8

Or see this region's nucleotide sequence