Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1372

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9739 and 9740 are separated by 334 nucleotides9740 and 9741 are separated by 414 nucleotides mRNA_1371: 9739 - KOG3024 Uncharacterized conserved protein, at 114,058 to 115,447 9739 mRNA_1372: 9740 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 115,782 to 116,339 9740 mRNA_1373: 9741 - K05661 ABCB6 ATP-binding cassette, subfamily B (MDR/TAP), member 6, at 116,754 to 120,065 9741

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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115,527 - +0.6
115,843 - 9740 mRNA_1372 0.11 +0.4
116,036 + 9740 mRNA_1372 0.46 +1.0
116,187 + 9740 mRNA_1372 0.73 +0.8
116,267 + 9740 mRNA_1372 0.87 +1.2
116,419 - +0.4
116,420 + -0.0
116,576 + +1.0
116,604 - +1.5
116,731 + +1.0
116,876 - +0.7
117,019 - -0.3
117,055 - +1.7
117,188 + 9741 mRNA_1373 0.13 -0.4
117,208 + 9741 mRNA_1373 0.14 +1.2

Or see this region's nucleotide sequence