Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1392

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9759 and 9760 are separated by 664 nucleotides9760 and 9761 are separated by 152 nucleotides mRNA_1391: 9759 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 160,091 to 161,111 9759 mRNA_1392: 9760 - HMMPfam-DASH complex subunit Dam1-PF08653, at 161,776 to 163,110 9760 mRNA_1393: 9761 - Hypothetical Protein, at 163,263 to 164,488 9761

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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160,802 - 9759 mRNA_1391 0.70 -0.5
160,850 + 9759 mRNA_1391 0.74 +0.3
161,101 - +0.3
161,125 + -0.8
161,275 - -1.1
161,282 - +1.0
161,292 - +0.9
161,416 - +0.3
161,429 - -0.3
161,555 - +2.1
162,396 + 9760 mRNA_1392 0.46 +0.8
162,859 + 9760 mRNA_1392 0.81 +0.4
163,017 + -1.9
163,165 + +0.1
163,586 - 9761 mRNA_1393 0.26 -0.5
163,730 - 9761 mRNA_1393 0.38 +0.5

Or see this region's nucleotide sequence