Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1401

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9768 and 9769 are separated by 121 nucleotides9769 and 9770 are separated by 463 nucleotides mRNA_1400: 9768 - K20360 TBC1D22, GYP1 TBC1 domain family member 2, at 181,487 to 184,184 9768 mRNA_1401: 9769 - Hypothetical Protein, at 184,306 to 185,166 9769 mRNA_1402: 9770 - K06654 PHO80 phosphate system cyclin PHO80, at 185,630 to 187,322 9770

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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184,261 + -2.2
184,270 - +1.7
184,320 - +0.4
184,333 + +0.8
184,445 + 9769 mRNA_1401 0.16 -0.3
184,453 + 9769 mRNA_1401 0.17 +0.5
184,459 - 9769 mRNA_1401 0.18 -1.4
184,459 - 9769 mRNA_1401 0.18 +0.9
185,488 + +1.6
185,591 - +2.4
185,900 + 9770 mRNA_1402 0.16 +1.8
185,935 - 9770 mRNA_1402 0.18 -0.3

Or see this region's nucleotide sequence