Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1412

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9779 and 9780 are separated by 506 nucleotides mRNA_1411: 9779 - Hypothetical Protein, at 205,641 to 206,403 9779 mRNA_1412: 9780 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 206,910 to 211,871 9780

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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205,911 - 9779 mRNA_1411 0.35 +0.8
206,008 - 9779 mRNA_1411 0.48 -0.0
206,220 + 9779 mRNA_1411 0.76 +1.3
206,326 - 9779 mRNA_1411 0.90 +0.4
206,327 - -0.1
206,353 + +0.9
206,458 - -0.8
206,471 + +0.7
206,608 - -0.2
206,633 + +0.7
206,803 - +1.2
206,968 + +0.2
207,082 - +0.1
207,516 + 9780 mRNA_1412 0.12 +1.7
207,546 - 9780 mRNA_1412 0.13 +1.2
207,549 + 9780 mRNA_1412 0.13 +0.4
207,647 - 9780 mRNA_1412 0.15 +0.2
207,843 - 9780 mRNA_1412 0.19 +0.1
207,965 + 9780 mRNA_1412 0.21 -0.8
207,973 - 9780 mRNA_1412 0.21 +1.1
207,987 + 9780 mRNA_1412 0.22 +0.2
208,099 - 9780 mRNA_1412 0.24 -0.9
208,114 + 9780 mRNA_1412 0.24 +1.1
208,228 - 9780 mRNA_1412 0.27 +1.5
208,562 + 9780 mRNA_1412 0.33 -0.3
208,668 + 9780 mRNA_1412 0.35 +0.5
208,688 + 9780 mRNA_1412 0.36 -0.5
209,033 + 9780 mRNA_1412 0.43 +2.2
209,285 + 9780 mRNA_1412 0.48 -0.6
209,321 - 9780 mRNA_1412 0.49 -0.0
209,392 - 9780 mRNA_1412 0.50 +2.8
209,400 + 9780 mRNA_1412 0.50 -0.4
209,599 + 9780 mRNA_1412 0.54 -0.6
209,713 + 9780 mRNA_1412 0.56 +0.9
209,762 + 9780 mRNA_1412 0.57 +0.9
210,139 + 9780 mRNA_1412 0.65 +0.3
210,892 - 9780 mRNA_1412 0.80 +1.1
211,423 - -1.6
211,427 + -0.5
211,814 + -0.6
212,142 + +1.8
212,226 - +1.3
212,228 - +1.2
212,369 - +0.3
212,543 + -1.1
212,702 - +1.5
212,811 - +0.5

Or see this region's nucleotide sequence