Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1520

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9887 and 9888 are separated by 316 nucleotides9888 and 9889 are separated by 269 nucleotides mRNA_1519: 9887 - K03434 PIGL N-acetylglucosaminylphosphatidylinositol deacetylase, at 498,486 to 499,593 9887 mRNA_1520: 9888 - K00765 hisG ATP phosphoribosyltransferase, at 499,910 to 501,221 9888 mRNA_1521: 9889 - HMMPfam-DNA polymerase delta, subunit 4-PF04081, at 501,491 to 502,163 9889

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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499,643 + +0.6
499,653 + -0.6
499,673 + -0.4
499,673 + +2.4
499,790 + +0.5
499,791 + -0.9
499,794 - -0.3
501,292 + +0.6
501,709 - 9889 mRNA_1521 0.32 +0.6
501,728 + 9889 mRNA_1521 0.35 -1.1
501,993 + 9889 mRNA_1521 0.75 -1.0
502,138 - -0.5
502,143 + +0.3
502,147 + -2.6
502,169 - -0.2
502,170 + -1.1
502,171 - +0.3

Or see this region's nucleotide sequence