Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1542

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9909 and 9910 are separated by 456 nucleotides9910 and 9911 are separated by 514 nucleotides mRNA_1541: 9909 - K14753 RACK1 guanine nucleotide-binding protein subunit beta-2-like 1 protein, at 549,088 to 551,017 9909 mRNA_1542: 9910 - K01834 PGAM, gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 551,474 to 552,455 9910 mRNA_1543: 9911 - Hypothetical Protein, at 552,970 to 553,858 9911

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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551,163 - +0.5
551,227 - -0.1
551,491 - -0.0
552,688 + -0.8
552,716 + +0.5
552,814 - +1.3
552,833 - +0.3
552,834 - -0.3
552,835 + -0.1
552,869 - +1.1
553,300 + 9911 mRNA_1543 0.37 +0.2

Or see this region's nucleotide sequence