Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1582

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9949 and 9950 are separated by 597 nucleotides9950 and 9951 are separated by 162 nucleotides mRNA_1581: 9949 - HMMPfam-Protein of unknown function (DUF3759)-PF12585, at 651,787 to 652,843 9949 mRNA_1582: 9950 - K01381 PEP4 saccharopepsin, at 653,441 to 655,468 9950 mRNA_1583: 9951 - HMMPfam-Mediator complex protein-PF10280, at 655,631 to 656,397 9951

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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653,037 - -1.2
653,309 - +0.1
653,356 + +1.7
654,376 + 9950 mRNA_1582 0.46 -3.7
654,905 - 9950 mRNA_1582 0.72 -1.4
654,910 + 9950 mRNA_1582 0.72 -0.3
655,212 - 9950 mRNA_1582 0.87 -2.0
655,494 + +0.4
655,502 + -0.5
655,505 + +0.3
655,534 + -1.1
655,718 + 9951 mRNA_1583 0.11 -1.4

Or see this region's nucleotide sequence