Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1653

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10020 and 10021 are separated by 915 nucleotides10021 and 10022 are separated by 636 nucleotides mRNA_1652: 10020 - Hypothetical Protein, at 812,442 to 813,114 10020 mRNA_1653: 10021 - Hypothetical Protein, at 814,030 to 815,626 10021 mRNA_1654: 10022 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 816,263 to 817,600 10022

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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813,407 - +0.0
813,523 - -0.3
813,536 - -0.1
813,547 + +0.1
813,618 + +0.5
813,619 - +0.1
813,647 - +2.0
813,702 + +0.3
814,268 - 10021 mRNA_1653 0.15 +0.4
814,268 - 10021 mRNA_1653 0.15 +0.0
814,292 + 10021 mRNA_1653 0.16 -1.4
814,319 + 10021 mRNA_1653 0.18 -0.2
814,409 + 10021 mRNA_1653 0.24 -0.3
814,874 - 10021 mRNA_1653 0.53 +2.0
814,981 + 10021 mRNA_1653 0.60 +0.4
815,337 + 10021 mRNA_1653 0.82 +0.1
815,879 - +0.0
816,315 - +0.6
816,518 - 10022 mRNA_1654 0.19 -0.3

Or see this region's nucleotide sequence