Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1706

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10074 and 10075 overlap by 4 nucleotides mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1,191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1,188 to 2,835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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26 + -0.9
27 + +1.2
28 + -0.8
31 + +1.6
31 + +0.8
41 + -0.3
66 + +0.6
72 - +0.0
72 - +0.0
93 + +0.5
104 + -0.5
105 + +0.6
108 + -0.5
120 - -1.5
128 + +0.7
135 - -1.8
136 + +0.2
136 - -1.3
137 - +0.6
137 - -1.1
138 + +0.4
139 + -0.1
141 - -0.1
150 - -0.7
151 - +0.6
155 + -2.4
155 + -0.8
156 + +0.7
158 + -2.4
173 - -0.2
175 + +1.4
180 - +0.1
215 + +0.3
220 - +0.1
234 + +0.3
254 - +0.5
283 + +0.8
304 + +0.1
322 + -1.0
324 + +0.4
427 + +0.4
453 + 10074 mRNA_1706 0.13 -0.3
465 - 10074 mRNA_1706 0.14 -0.3
482 + 10074 mRNA_1706 0.16 +1.0
493 - 10074 mRNA_1706 0.18 +0.6
647 + 10074 mRNA_1706 0.36 +0.6
683 - 10074 mRNA_1706 0.40 -0.6
809 + 10074 mRNA_1706 0.55 +1.9
842 - 10074 mRNA_1706 0.59 +0.3
844 + 10074 mRNA_1706 0.59 -0.3
848 - 10074 mRNA_1706 0.59 +0.1
902 + 10074 mRNA_1706 0.66 +0.9
949 - 10074 mRNA_1706 0.71 -0.4
949 - 10074 mRNA_1706 0.71 -1.5
950 + 10074 mRNA_1706 0.71 +0.0
974 - 10074 mRNA_1706 0.74 +0.1
1,016 + 10074 mRNA_1706 0.79 -0.7
1,065 + 10074 mRNA_1706 0.85 +0.1
1,118 + +0.5
1,142 + -0.2
1,155 + +0.9
1,272 - +0.8
1,281 + +1.7
1,573 + 10075 mRNA_1707 0.23 +0.8
1,625 + 10075 mRNA_1707 0.27 -1.0
1,625 + 10075 mRNA_1707 0.27 +0.6
1,628 + 10075 mRNA_1707 0.27 -0.6
1,646 + 10075 mRNA_1707 0.28 +1.0
1,649 - 10075 mRNA_1707 0.28 +1.1
1,680 + 10075 mRNA_1707 0.30 -0.1
1,781 + 10075 mRNA_1707 0.36 +0.2
1,926 + 10075 mRNA_1707 0.45 +0.7
1,996 + 10075 mRNA_1707 0.49 +1.1
2,005 - 10075 mRNA_1707 0.50 -0.9
2,010 - 10075 mRNA_1707 0.50 -0.2
2,033 + 10075 mRNA_1707 0.51 +0.1
2,068 + 10075 mRNA_1707 0.53 +0.5
2,076 + 10075 mRNA_1707 0.54 -1.5

Or see this region's nucleotide sequence