Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1755

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10122 and 10123 are separated by 128 nucleotides10123 and 10124 are separated by 157 nucleotides mRNA_1754: 10122 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 121,684 to 123,500 10122 mRNA_1755: 10123 - K00326 E1.6.2.2 cytochrome-b5 reductase, at 123,629 to 124,708 10123 mRNA_1756: 10124 - KOG2821 RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin A, at 124,866 to 126,194 10124

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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122,859 - 10122 mRNA_1754 0.65 +0.8
122,878 + 10122 mRNA_1754 0.66 -0.7
122,914 - 10122 mRNA_1754 0.68 -0.9
123,206 - 10122 mRNA_1754 0.84 +0.3
123,219 + 10122 mRNA_1754 0.84 +0.8
123,328 + -1.2
123,467 + -0.2
123,470 - +0.2
123,767 - 10123 mRNA_1755 0.13 +2.4
123,924 + 10123 mRNA_1755 0.27 +2.0
123,926 + 10123 mRNA_1755 0.28 +1.7
123,934 - 10123 mRNA_1755 0.28 +2.1
123,942 + 10123 mRNA_1755 0.29 +2.4
124,349 - 10123 mRNA_1755 0.67 +2.1
124,497 + 10123 mRNA_1755 0.80 +3.0
124,501 - 10123 mRNA_1755 0.81 +0.8
124,634 - +2.3
124,640 - +2.4
124,781 - +0.1
124,798 - -0.1
124,813 - +1.9
124,818 - +0.1
124,853 - +1.7
124,960 - +0.1
125,073 - 10124 mRNA_1756 0.16 -0.1
125,075 - 10124 mRNA_1756 0.16 -0.9
125,373 - 10124 mRNA_1756 0.38 +1.2
125,397 - 10124 mRNA_1756 0.40 +0.7
125,429 - 10124 mRNA_1756 0.42 -1.2
125,539 - 10124 mRNA_1756 0.51 +1.0
125,562 - 10124 mRNA_1756 0.52 +0.7
125,567 + 10124 mRNA_1756 0.53 +0.2

Or see this region's nucleotide sequence