Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1901

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10268 and 10269 are separated by 324 nucleotides10269 and 10270 are separated by 120 nucleotides mRNA_1900: 10268 - K15071 RCY1, POF6 recyclin-1, at 464,695 to 468,117 10268 mRNA_1901: 10269 - HMMPfam-Spo7-like protein-PF03907, at 468,442 to 470,059 10269 mRNA_1902: 10270 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 470,180 to 472,538 10270

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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467,464 + 10268 mRNA_1900 0.81 -3.2
467,570 + 10268 mRNA_1900 0.84 +0.6
467,590 + 10268 mRNA_1900 0.85 -0.7
467,733 - 10268 mRNA_1900 0.89 -1.2
468,105 - -0.7
468,209 + -0.4
468,247 - +0.1
468,373 - +0.1
468,375 + -0.1
468,382 + +0.4
468,383 - +0.5
469,707 + 10269 mRNA_1901 0.78 -0.4
469,797 - 10269 mRNA_1901 0.84 -0.1
469,970 - +0.8
469,975 + +0.1
470,044 - -1.1
470,133 - +0.1
470,202 - +2.0
470,382 - -0.4
470,383 - -0.7
470,438 + 10270 mRNA_1902 0.11 +0.7
470,454 - 10270 mRNA_1902 0.12 +1.5

Or see this region's nucleotide sequence