Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1913

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10280 and 10281 are separated by 578 nucleotides10281 and 10282 are separated by 309 nucleotides mRNA_1912: 10280 - K04450 ATF2, CREBP1 cyclic AMP-dependent transcription factor ATF-2, at 500,203 to 502,614 10280 mRNA_1913: 10281 - K04564 SOD2 superoxide dismutase, Fe-Mn family, at 503,193 to 504,426 10281 mRNA_1914: 10282 - K07942 ARL1 ADP-ribosylation factor-like protein 1, at 504,736 to 505,677 10282

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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502,205 - 10280 mRNA_1912 0.83 +1.7
502,233 + 10280 mRNA_1912 0.84 +0.5
502,361 - 10280 mRNA_1912 0.89 +1.3
502,364 + 10280 mRNA_1912 0.90 +1.1
502,518 - +1.9
502,530 + +0.4
502,545 + -0.4
502,551 + +1.3
502,627 + +2.2
502,652 + +1.1
502,661 + +1.2
502,664 - +1.2
502,669 - +0.1
502,673 - +0.5
502,678 + +1.1
502,679 + +0.6
502,690 + -0.4
502,705 + +0.1
502,716 + +0.8
502,724 + -0.1
502,826 - +0.0
502,826 + +1.3
502,827 + -2.3
502,834 + +1.0
502,838 + +1.7
502,855 + +0.9
502,859 - +2.5
502,864 + +0.8
502,876 + +0.9
502,968 - +0.3
502,988 - -1.4
502,989 + -0.8
502,989 + -0.4
502,995 - -0.5
503,000 - -0.0
503,002 - -0.2
503,003 - -1.7
503,023 + -0.3
503,024 - +1.9
503,064 + +3.3
503,148 + +0.1
503,149 + +1.9
503,153 - -3.2
503,157 - +0.1
503,157 - +0.8
503,158 + -0.0
504,493 - -0.8
504,499 - +1.0
504,507 + -0.1
504,526 + +1.7
504,537 + -0.1
504,645 + +1.8
504,651 + +0.9
504,659 - +0.4
504,668 + -1.3
504,792 + +0.4
504,810 + -0.0
504,942 - 10282 mRNA_1914 0.22 +1.1
505,404 - 10282 mRNA_1914 0.71 +1.1

Or see this region's nucleotide sequence