Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2000

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10367 and 10368 are separated by 236 nucleotides10368 and 10369 are separated by 113 nucleotides mRNA_1999: 10367 - Hypothetical Protein, at 706,788 to 707,404 10367 mRNA_2000: 10368 - K09650 PARL, PSARL, PCP1 rhomboid-like protein, at 707,641 to 708,923 10368 mRNA_2001: 10369 - Hypothetical Protein, at 709,037 to 710,403 10369

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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706,849 + +0.8
706,897 + 10367 mRNA_1999 0.18 -2.9
706,914 + 10367 mRNA_1999 0.20 +0.2
706,916 + 10367 mRNA_1999 0.21 -1.8
707,071 + 10367 mRNA_1999 0.46 +0.1
707,347 + -1.4
707,572 + +0.2
707,645 + -2.2
707,941 + 10368 mRNA_2000 0.23 -0.5
708,062 - 10368 mRNA_2000 0.33 +0.3
708,079 - 10368 mRNA_2000 0.34 +0.3
708,213 + 10368 mRNA_2000 0.45 -1.5
708,247 + 10368 mRNA_2000 0.47 +0.3
708,508 + 10368 mRNA_2000 0.68 +0.4
708,514 + 10368 mRNA_2000 0.68 -0.4
708,615 - 10368 mRNA_2000 0.76 +0.7
708,638 + 10368 mRNA_2000 0.78 +2.0
708,650 - 10368 mRNA_2000 0.79 -1.2
708,654 - 10368 mRNA_2000 0.79 +0.5
708,662 - 10368 mRNA_2000 0.80 -0.6
708,812 + +1.4
708,828 + +1.0
708,830 + -2.2
708,947 - +0.5
708,968 + +0.1
708,984 + -2.0
709,074 - +1.3
709,098 + +1.7
709,113 - +0.3
709,115 + +0.4
709,117 - +0.6
709,123 - +4.0
709,394 - 10369 mRNA_2001 0.26 +1.8

Or see this region's nucleotide sequence