Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2083

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10451 and 10452 are separated by 519 nucleotides mRNA_2083: 10451 - K06276 PDPK1 3-phosphoinositide dependent protein kinase-1, at 30,266 to 34,170 10451 mRNA_2084: 10452 - KOG0254 Predicted transporter (major facilitator superfamily), at 34,690 to 37,198 10452

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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29,512 + -0.0
29,516 - +0.5
29,525 - +0.4
29,526 + +1.8
29,530 + +0.1
29,532 - -0.1
29,535 - +2.1
29,551 - +0.9
29,700 - -0.7
29,708 + +1.3
29,710 + -0.8
29,711 + +0.5
29,738 + -1.1
29,818 - +0.3
29,851 + +0.7
29,867 + +0.5
29,886 - -1.2
30,572 - +1.3
30,587 + +0.8
30,772 - 10451 mRNA_2083 0.13 +0.9
30,868 + 10451 mRNA_2083 0.15 +0.4
31,268 - 10451 mRNA_2083 0.26 +0.0
31,318 + 10451 mRNA_2083 0.27 +0.1
31,349 - 10451 mRNA_2083 0.28 +1.0
31,414 - 10451 mRNA_2083 0.29 +0.3
33,036 + 10451 mRNA_2083 0.71 +1.6
33,217 + 10451 mRNA_2083 0.76 +0.4
33,221 + 10451 mRNA_2083 0.76 +1.1
33,509 - 10451 mRNA_2083 0.83 +0.9
33,577 - 10451 mRNA_2083 0.85 -0.1
33,630 + 10451 mRNA_2083 0.86 +0.1
33,816 + +2.3
33,833 + +0.5
33,961 + +0.9
33,964 - -1.1
33,973 + +1.1
34,091 - +0.3
34,118 + +0.8
34,215 - -0.1
34,266 - +0.6
34,369 + +1.9
34,692 - +0.5
34,980 + 10452 mRNA_2084 0.12 +0.3
35,015 + 10452 mRNA_2084 0.13 -0.9
35,019 - 10452 mRNA_2084 0.13 +0.1
35,150 + 10452 mRNA_2084 0.18 +1.2

Or see this region's nucleotide sequence