Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2134

Experiment: Dropout Complete

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10501 and 10502 are separated by 326 nucleotides10502 and 10503 are separated by 131 nucleotides mRNA_2133: 10501 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,ProSiteProfiles-Zinc finger RanBP2 type profile.-PS50199,SMART-Zinc finger domain-SM00547,SUPERFAMILY--SSF90209, at 146,345 to 148,532 10501 mRNA_2134: 10502 - K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5, at 148,859 to 150,709 10502 mRNA_2135: 10503 - KOG2922 Uncharacterized conserved protein, at 150,841 to 152,742 10503

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
remove
148,118 - 10501 mRNA_2133 0.81 +0.8
148,407 + +0.4
148,501 + -1.0
148,724 - -0.7
149,400 + 10502 mRNA_2134 0.29 +0.5
149,911 + 10502 mRNA_2134 0.57 +0.6
149,913 - 10502 mRNA_2134 0.57 +1.2
150,277 - 10502 mRNA_2134 0.77 -0.1
150,622 + +1.8
150,623 + +1.6
150,712 + -0.5
150,725 + -0.1
150,752 + +0.6
150,774 + +0.3
150,861 - +0.2
150,896 - +0.8
150,941 + +0.5
151,043 - 10503 mRNA_2135 0.11 +0.3
151,062 - 10503 mRNA_2135 0.12 -0.7
151,089 + 10503 mRNA_2135 0.13 +0.5
151,197 + 10503 mRNA_2135 0.19 -0.0
151,216 + 10503 mRNA_2135 0.20 -0.2
151,245 - 10503 mRNA_2135 0.21 +0.1
151,478 - 10503 mRNA_2135 0.33 +0.1

Or see this region's nucleotide sequence