Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2162

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10529 and 10530 are separated by 339 nucleotides10530 and 10531 are separated by 233 nucleotides mRNA_2161: 10529 - K03458 TC.NCS2 nucleobase-cation symporter-2, NCS2 family, at 220,965 to 223,272 10529 mRNA_2162: 10530 - K15027 EIF2D translation initiation factor 2D, at 223,612 to 225,989 10530 mRNA_2163: 10531 - K18468 VPS35 vacuolar protein sorting-associated protein 35, at 226,223 to 229,992 10531

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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222,870 - 10529 mRNA_2161 0.83 +0.1
222,897 + 10529 mRNA_2161 0.84 -3.1
222,972 - 10529 mRNA_2161 0.87 -0.1
223,126 + +0.3
223,293 - -0.2
223,306 - -1.1
223,702 - -0.2
223,888 - 10530 mRNA_2162 0.12 -0.1
223,940 - 10530 mRNA_2162 0.14 -0.0
224,138 + 10530 mRNA_2162 0.22 -1.0
224,421 + 10530 mRNA_2162 0.34 -1.0
225,017 - 10530 mRNA_2162 0.59 +0.4
225,766 + +2.4
225,888 - +1.7
225,920 + +0.4
226,067 - -0.7
226,080 - -0.5
226,221 + -1.7

Or see this region's nucleotide sequence