Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2412

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10779 and 10780 are separated by 454 nucleotides10780 and 10781 are separated by 476 nucleotides mRNA_2411: 10779 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF81383, at 60,970 to 61,863 10779 mRNA_2412: 10780 - K04378 SRF serum response factor, at 62,318 to 64,458 10780 mRNA_2413: 10781 - K13108 SNIP1 smad nuclear-interacting protein 1, at 64,935 to 66,206 10781

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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61,418 - 10779 mRNA_2411 0.50 +0.7
61,458 + 10779 mRNA_2411 0.55 +0.2
61,481 + 10779 mRNA_2411 0.57 -0.7
61,589 + 10779 mRNA_2411 0.69 -0.4
61,667 + 10779 mRNA_2411 0.78 -0.5
61,759 - 10779 mRNA_2411 0.88 -0.9
61,768 - 10779 mRNA_2411 0.89 +0.1
61,836 + -0.7
61,903 - -0.3
62,050 - -0.6
62,113 + -0.4
62,200 - -1.2
62,777 + 10780 mRNA_2412 0.21 -0.3
62,808 + 10780 mRNA_2412 0.23 +0.5
63,079 - 10780 mRNA_2412 0.36 +0.6
63,583 - 10780 mRNA_2412 0.59 -1.7
63,747 - 10780 mRNA_2412 0.67 -0.5
63,791 - 10780 mRNA_2412 0.69 +0.6
63,835 + 10780 mRNA_2412 0.71 +0.3
63,989 - 10780 mRNA_2412 0.78 +0.5
64,275 + -0.3
64,299 - +0.1
64,712 + +0.1
64,722 - -0.9
64,768 - -0.5
64,880 + -0.7
64,899 - +0.7
64,899 + +1.4
64,900 + -0.3
64,902 - +1.5
64,902 + +0.9
64,913 + +1.1
64,928 + -0.9

Or see this region's nucleotide sequence