Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2433

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10800 and 10801 are separated by 157 nucleotides10801 and 10802 are separated by 723 nucleotides mRNA_2432: 10800 - K20028 ZDHHC2_15_20 palmitoyltransferase ZDHHC2/15/20, at 111,348 to 112,998 10800 mRNA_2433: 10801 - K10866 RAD50 DNA repair protein RAD50, at 113,156 to 118,783 10801 mRNA_2434: 10802 - HMMPfam-ATP synthase subunit H-PF05493, at 119,507 to 119,841 10802

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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112,458 - 10800 mRNA_2432 0.67 +0.3
112,605 + 10800 mRNA_2432 0.76 +0.2
113,013 - -0.1
113,893 - 10801 mRNA_2433 0.13 -0.4
114,507 + 10801 mRNA_2433 0.24 +0.6
115,541 + 10801 mRNA_2433 0.42 +2.3
116,530 - 10801 mRNA_2433 0.60 -1.5
118,761 + -1.2
118,946 - -0.2
119,068 + -0.6
119,094 + -2.1
119,104 + -0.2
119,120 + -0.4
119,226 + +0.9
119,388 - +0.8

Or see this region's nucleotide sequence