Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2833

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11200 and 11201 are separated by 629 nucleotides11201 and 11202 are separated by 300 nucleotides mRNA_2832: 11200 - KOG1611 Predicted short chain-type dehydrogenase, at 319,587 to 320,810 11200 mRNA_2833: 11201 - KOG0254 Predicted transporter (major facilitator superfamily), at 321,440 to 324,159 11201 mRNA_2834: 11202 - K01001 ALG7 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase, at 324,460 to 326,344 11202

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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320,705 - -0.2
320,714 + -0.4
320,719 - -1.0
320,723 - -1.6
320,781 + -1.0
320,785 - -0.6
320,815 + +1.6
320,857 + +1.0
320,863 + -0.0
320,870 - +2.0
320,974 - -0.3
321,094 + +1.4
321,573 - +1.2
321,592 + -1.7
321,749 + 11201 mRNA_2833 0.11 +0.9
321,886 - 11201 mRNA_2833 0.16 +0.1
321,886 - 11201 mRNA_2833 0.16 -0.8
322,194 - 11201 mRNA_2833 0.28 -1.3
322,290 + 11201 mRNA_2833 0.31 -1.9
322,314 - 11201 mRNA_2833 0.32 +0.2
322,318 + 11201 mRNA_2833 0.32 -0.5
322,599 - 11201 mRNA_2833 0.43 +1.5
322,606 + 11201 mRNA_2833 0.43 +0.6
322,621 + 11201 mRNA_2833 0.43 -0.1
322,685 + 11201 mRNA_2833 0.46 -0.3
322,905 + 11201 mRNA_2833 0.54 +1.8
323,007 + 11201 mRNA_2833 0.58 -0.2
323,320 + 11201 mRNA_2833 0.69 -2.7
323,783 - 11201 mRNA_2833 0.86 -0.2
323,916 - -0.3
323,922 - -0.8
323,926 - +0.6
324,045 - +0.3
324,155 - +0.7
324,179 - +1.6
324,186 - +0.2
324,208 - -1.2
324,209 + -1.2
324,227 + -0.9
324,379 + +2.3
324,427 + +0.9

Or see this region's nucleotide sequence