Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2870

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11237 and 11238 are separated by 223 nucleotides11238 and 11239 are separated by 413 nucleotides mRNA_2869: 11237 - KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes, at 407,863 to 408,924 11237 mRNA_2870: 11238 - SUPERFAMILY--SSF64182, at 409,148 to 410,896 11238 mRNA_2871: 11239 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 411,310 to 412,108 11239

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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408,442 - 11237 mRNA_2869 0.55 +0.8
408,449 + 11237 mRNA_2869 0.55 -0.5
408,641 + 11237 mRNA_2869 0.73 +0.5
408,893 + -0.3
408,899 + +0.6
409,171 + +0.2
409,549 + 11238 mRNA_2870 0.23 -0.4
410,368 - 11238 mRNA_2870 0.70 +0.2
410,524 + 11238 mRNA_2870 0.79 -2.3
410,689 + 11238 mRNA_2870 0.88 +0.3
410,840 + +1.1
410,920 + +0.7
410,963 + +0.8
410,968 - -1.5
410,971 + +0.8
410,972 - +0.3
410,974 - -0.3
410,974 - -0.9
410,975 + -0.1
411,007 - +1.4
411,007 - +0.2
411,008 - -2.2
411,012 + -0.8
411,015 + -0.7
411,023 + +1.2
411,024 + -0.5
411,025 + +0.5
411,034 + +1.0
411,034 + -0.0
411,035 + +0.6
411,035 + +2.0
411,036 + -0.4
411,039 + +0.3
411,070 + +0.2
411,083 + -0.0
411,083 - -0.8
411,084 + +0.2
411,085 - +1.4
411,087 + -0.4
411,100 - +0.1
411,105 + +0.0
411,108 + -2.5
411,111 + +1.5
411,114 + +1.1
411,117 + +1.2
411,228 + -0.3
411,231 + +0.4
411,234 - +1.1
411,248 + +2.2
411,506 - 11239 mRNA_2871 0.25 -0.7
411,531 + 11239 mRNA_2871 0.28 +0.3
411,660 - 11239 mRNA_2871 0.44 +0.1
411,687 + 11239 mRNA_2871 0.47 -0.0
411,692 - 11239 mRNA_2871 0.48 +1.2
411,692 - 11239 mRNA_2871 0.48 +0.6
411,695 + 11239 mRNA_2871 0.48 -1.3
411,841 - 11239 mRNA_2871 0.66 +2.8

Or see this region's nucleotide sequence