Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2884

Experiment: Dropout Complete

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11251 and 11252 are separated by 307 nucleotides11252 and 11253 are separated by 148 nucleotides mRNA_2883: 11251 - K16675 ZDHHC9_14_18 palmitoyltransferase ZDHHC9/14/18, at 445,200 to 447,494 11251 mRNA_2884: 11252 - K10838 XPC xeroderma pigmentosum group C-complementing protein, at 447,802 to 451,973 11252 mRNA_2885: 11253 - K20246 EGT1 L-histidine Nalpha-methyltransferase / hercynylcysteine S-oxide synthase, at 452,122 to 455,835 11253

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
remove
447,014 - 11251 mRNA_2883 0.79 +0.5
447,118 + 11251 mRNA_2883 0.84 -2.2
447,123 - 11251 mRNA_2883 0.84 +1.0
447,423 - +1.0
447,430 + -0.1
447,586 - +0.6
447,597 + -1.5
447,723 + -0.4
447,748 + +0.9
447,872 + +0.3
447,890 + +0.6
447,985 - -0.2
448,040 + +2.1
448,320 + 11252 mRNA_2884 0.12 +1.1
448,329 + 11252 mRNA_2884 0.13 -0.6
448,753 - 11252 mRNA_2884 0.23 -1.7
449,318 - 11252 mRNA_2884 0.36 +1.1
449,331 - 11252 mRNA_2884 0.37 +0.5
449,665 + 11252 mRNA_2884 0.45 -1.2
449,724 - 11252 mRNA_2884 0.46 -0.4
449,753 + 11252 mRNA_2884 0.47 +1.4
449,807 - 11252 mRNA_2884 0.48 -0.9
450,349 - 11252 mRNA_2884 0.61 +0.9
450,655 - 11252 mRNA_2884 0.68 -0.2
450,672 - 11252 mRNA_2884 0.69 -1.9
450,834 + 11252 mRNA_2884 0.73 +1.6
451,256 - 11252 mRNA_2884 0.83 +1.1
451,331 + 11252 mRNA_2884 0.85 +1.9
451,381 - 11252 mRNA_2884 0.86 +0.7
451,416 - 11252 mRNA_2884 0.87 +0.3
451,782 - -0.3
452,113 + +0.1
452,154 + +0.2
452,154 + +1.0
452,264 - +0.1
452,269 + +0.1

Or see this region's nucleotide sequence