Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2899

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11266 and 11267 are separated by 437 nucleotides mRNA_2898: 11266 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 483,006 to 488,500 11266 mRNA_2899: 11267 - K15276 SLC35B2, PAPST1 solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2, at 488,938 to 492,084 11267

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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487,989 - +0.7
488,154 + +0.4
488,224 - +0.7
488,235 - +0.3
488,262 + -1.2
488,372 - -0.7
488,389 + -0.3
488,506 - +2.4
488,521 + -0.0
488,534 + +0.0
488,556 + -0.9
488,650 - +1.1
488,712 - -0.4
488,719 + +0.1
488,766 + -2.0
488,806 + +0.1
488,807 - +1.6
488,935 - -0.4
488,937 + -0.3
488,969 - +0.0
488,970 + +0.1
488,997 + -1.3
489,000 + +0.9
489,038 - +1.8
489,553 + 11267 mRNA_2899 0.20 +0.3
489,675 + 11267 mRNA_2899 0.23 -0.5
489,773 + 11267 mRNA_2899 0.27 -1.0
489,878 - 11267 mRNA_2899 0.30 -0.1
489,970 - 11267 mRNA_2899 0.33 +0.1
489,988 - 11267 mRNA_2899 0.33 -0.8
490,005 - 11267 mRNA_2899 0.34 +1.4
490,995 - 11267 mRNA_2899 0.65 +0.1
491,034 + 11267 mRNA_2899 0.67 +0.4
491,116 + 11267 mRNA_2899 0.69 +2.7
491,250 + 11267 mRNA_2899 0.73 +0.5
491,363 - 11267 mRNA_2899 0.77 +3.0
491,396 - 11267 mRNA_2899 0.78 +0.7
491,402 + 11267 mRNA_2899 0.78 -0.1
491,825 - +0.7
492,271 + -1.5
492,515 - +1.2
492,597 + +0.4
492,607 + +0.8
492,686 - -2.2
492,716 - -0.0
492,778 + +1.8
492,872 - +1.0
492,889 + -1.5

Or see this region's nucleotide sequence