Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2912

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11279 and 11280 are separated by 365 nucleotides11280 and 11281 are separated by 288 nucleotides mRNA_2911: 11279 - BLAST ATP-dependent DNA helicase [Trichosporon asahii v..., at 520,470 to 521,587 11279 mRNA_2912: 11280 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 521,953 to 523,755 11280 mRNA_2913: 11281 - K13703 ABHD11 abhydrolase domain-containing protein 11, at 524,044 to 525,341 11281

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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521,431 - 11279 mRNA_2911 0.86 +0.4
521,670 - -0.6
522,165 - 11280 mRNA_2912 0.12 +0.3
522,647 - 11280 mRNA_2912 0.38 +0.4
522,904 - 11280 mRNA_2912 0.53 +0.8
522,933 + 11280 mRNA_2912 0.54 -1.4
523,496 - 11280 mRNA_2912 0.86 +0.3
523,618 - -0.1
523,779 - -1.1
524,225 - 11281 mRNA_2913 0.14 -0.2
524,231 - 11281 mRNA_2913 0.14 -0.3
524,608 + 11281 mRNA_2913 0.43 -0.2
524,755 - 11281 mRNA_2913 0.55 -0.1

Or see this region's nucleotide sequence