Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2947

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11314 and 11315 are separated by 869 nucleotides11315 and 11316 are separated by 278 nucleotides mRNA_2946: 11314 - SUPERFAMILY--SSF56112, at 619,500 to 621,824 11314 mRNA_2947: 11315 - Hypothetical Protein, at 622,694 to 625,091 11315 mRNA_2948: 11316 - K12817 PRPF18, PRP18 pre-mRNA-splicing factor 18, at 625,370 to 627,125 11316

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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621,703 + -0.8
621,735 - +0.0
621,804 + -1.1
621,821 + +1.0
621,965 - +0.0
621,992 - -0.1
622,016 + +0.3
622,134 + +0.6
622,134 + -0.0
622,463 + -1.3
622,720 - +2.5
622,834 + -0.1
622,839 + +1.0
623,093 - 11315 mRNA_2947 0.17 -0.3
623,117 - 11315 mRNA_2947 0.18 -0.8
623,266 - 11315 mRNA_2947 0.24 -0.2
623,389 - 11315 mRNA_2947 0.29 -0.6
623,421 + 11315 mRNA_2947 0.30 -1.1
623,595 - 11315 mRNA_2947 0.38 +0.6
623,714 + 11315 mRNA_2947 0.43 +0.3
623,717 - 11315 mRNA_2947 0.43 +0.5
623,841 - 11315 mRNA_2947 0.48 -0.6
623,857 - 11315 mRNA_2947 0.48 -1.3
623,975 + 11315 mRNA_2947 0.53 +0.8
623,992 - 11315 mRNA_2947 0.54 +0.5
624,077 + 11315 mRNA_2947 0.58 +0.9
624,195 - 11315 mRNA_2947 0.63 +0.0
624,222 + 11315 mRNA_2947 0.64 -0.1
624,240 - 11315 mRNA_2947 0.64 -0.3
624,612 - 11315 mRNA_2947 0.80 -0.5
624,684 - 11315 mRNA_2947 0.83 -0.7
624,704 - 11315 mRNA_2947 0.84 +0.3
624,707 + 11315 mRNA_2947 0.84 +0.2
624,824 - 11315 mRNA_2947 0.89 -0.5
624,856 - -0.1
624,868 - -0.2
624,870 + +2.1
625,017 - +1.3
625,246 + +0.1
625,404 - +2.3

Or see this region's nucleotide sequence