Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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12 + +0.1
12 + +1.1
15 + -0.4
16 + +2.2
18 + +0.3
22 + +1.5
25 + -2.3
57 - -0.5
61 - -0.3
62 + -3.2
62 + +0.4
66 + -0.2
72 + +0.1
72 + -0.2
72 + +0.7
75 + -0.1
78 - -0.1
105 + +1.7
110 - -3.4
114 + +0.5
115 + -1.1
118 + +0.7
122 + +0.5
122 - -0.3
124 + +0.2
135 + -1.5
147 + +1.8
157 + +0.8
161 + +0.0
168 + +0.8
174 + +0.3
177 - +0.2
228 + -0.1
247 + -0.4
252 - +1.0
253 - +1.2
255 + +2.1
258 + +0.1
264 - +0.3
269 + +0.3
269 - +0.1
274 + -0.7
275 - +1.1
277 + -2.3
280 + +3.1
280 + -2.3
283 - +1.2
285 - -1.3
287 + -0.4
287 + +0.7
288 + +0.9
292 - -1.3
293 + +0.3
298 + +1.8
305 - +0.4
314 + +1.3
320 + +1.4
368 + +0.9
370 - -0.2
372 + +0.1
382 + +1.5
384 + +0.0
391 + +0.4
391 - +1.2
397 + +1.0
397 - +0.3
402 + -0.3
405 + +0.1
423 - +1.6
430 + +1.6
440 + +1.5
446 + +3.9
470 + -0.2
524 + +2.9
532 + -1.3
545 - -0.9
557 + -0.2
569 + +0.1
570 - +0.0
583 + +1.1
584 + -0.3
603 - +0.4
603 + -0.4
634 - 11537 mRNA_3169 0.11 +0.1
636 + 11537 mRNA_3169 0.11 -0.2
646 + 11537 mRNA_3169 0.12 +0.5
661 + 11537 mRNA_3169 0.13 +0.6
667 + 11537 mRNA_3169 0.14 +0.4
698 + 11537 mRNA_3169 0.17 +0.4
704 - 11537 mRNA_3169 0.18 +0.3
705 - 11537 mRNA_3169 0.18 +1.6
721 - 11537 mRNA_3169 0.19 -0.1
725 + 11537 mRNA_3169 0.20 +1.3
738 - 11537 mRNA_3169 0.21 +0.8
849 + 11537 mRNA_3169 0.32 +0.4
871 + 11537 mRNA_3169 0.34 +0.3
883 + 11537 mRNA_3169 0.35 -0.2
894 + 11537 mRNA_3169 0.37 +0.1
895 + 11537 mRNA_3169 0.37 +0.9
922 + 11537 mRNA_3169 0.39 -0.5
965 - 11537 mRNA_3169 0.44 +0.0
1,012 - 11537 mRNA_3169 0.48 -0.1
1,026 + 11537 mRNA_3169 0.50 +0.6
1,026 + 11537 mRNA_3169 0.50 +1.1
1,105 + 11537 mRNA_3169 0.58 +0.5
1,123 + 11537 mRNA_3169 0.60 +0.1
1,141 + 11537 mRNA_3169 0.61 +0.5
1,142 + 11537 mRNA_3169 0.61 +1.2
1,165 + 11537 mRNA_3169 0.64 +0.0
1,174 - 11537 mRNA_3169 0.65 -0.8
1,174 + 11537 mRNA_3169 0.65 -1.2
1,259 + 11537 mRNA_3169 0.73 +0.8
1,265 + 11537 mRNA_3169 0.74 +0.2
1,268 + 11537 mRNA_3169 0.74 +0.7
1,269 - 11537 mRNA_3169 0.74 +0.2
1,288 - 11537 mRNA_3169 0.76 +0.7
1,297 + 11537 mRNA_3169 0.77 -0.3
1,303 - 11537 mRNA_3169 0.78 -0.6
1,399 + 11537 mRNA_3169 0.87 +1.4
1,412 - 11537 mRNA_3169 0.88 -0.2
1,419 - 11537 mRNA_3169 0.89 -0.1
1,423 - 11537 mRNA_3169 0.90 +0.7
1,429 - +2.2
1,453 + +0.7
1,459 + +0.5
1,459 + -0.9
1,460 - +0.2
1,461 + +0.4
1,462 + +0.6
1,467 + +0.7
1,470 - +1.1
1,474 - +0.4
1,485 + +0.5
1,520 + -0.0
1,523 + +1.7
1,531 - -1.3
1,537 + -0.2
1,541 + +0.8
1,562 + +0.6
1,567 + +0.1
1,572 + -0.5
1,582 - -1.8
1,584 - +0.4
1,589 + -1.3
1,596 - +1.0
1,601 - +2.0
1,602 + -1.0
1,605 + -2.1
1,609 + -0.6
1,616 + -0.3
1,636 + +1.2
1,654 + -0.1
1,656 - -1.7
1,666 + +0.4
1,675 - +1.5
1,682 - -1.1
1,697 - -0.3
1,709 + +2.4
1,709 - +0.8
1,711 + +1.2
1,718 - +0.6
1,719 + -1.1
1,722 - +0.3
1,723 + +0.6
1,725 - +0.0
1,725 - -0.6
1,727 + -0.5
1,730 + -0.1
1,731 + +1.5
1,732 + -0.8
1,732 + +0.5
1,734 + -0.1
1,734 + +1.0
1,734 + +0.5
1,739 - +0.1
1,740 + -0.3
1,744 - +1.3
1,747 + +0.4
1,749 + +0.2
1,759 + -1.1
1,759 + -0.0
1,759 + +0.3
1,761 + -0.1
1,763 + +2.7
1,765 + +0.6
1,767 + +1.7
1,769 + +1.1
1,772 + +2.0
1,772 + -0.0
1,774 + +1.6
1,774 + -0.9
1,775 + +1.4
1,776 - +0.6
1,776 + -1.0
1,777 + -0.1
1,778 + +0.8
1,778 - +0.1
1,781 - +1.3
1,783 - +0.7
1,783 - +0.8
1,783 - +1.4
1,783 - -1.1
1,784 + -0.2
1,789 + -0.3
1,789 - -1.0
1,791 + -0.2
1,792 + +1.0
1,793 + +0.4
1,795 + +0.2
1,796 + -0.4
1,796 - +0.2
1,798 + +0.8
1,800 + -0.7
1,801 + +2.1
1,805 + -0.2
1,805 + -1.0
1,807 + +0.0
1,813 - -0.5
1,814 + -0.4
1,814 + +2.7
1,818 - -1.2
1,851 - -0.1
1,874 + -1.2
1,881 - -1.1
1,885 - +0.2
1,891 - -1.9
1,896 - -0.1
1,912 + +1.8
1,912 + -1.0
1,914 - -0.6
1,916 - -1.1
1,917 - +1.1
1,919 + -2.1
1,922 - +0.4
1,923 - -0.3
1,934 - -0.2
1,935 + +0.9
1,938 - +0.5
1,938 - -0.1
1,940 - -0.2
1,941 + +1.5
1,941 + +0.8
1,942 + -0.3
1,943 - -0.1
1,944 + +0.3
1,944 - +0.2
1,945 - -0.5
1,945 + +0.5
1,946 - -0.6
1,947 + +0.9
1,960 - -0.5
1,968 + -0.5
1,980 + -0.3
2,015 + -1.2
2,067 - -0.2
2,081 - +2.4
2,091 + -0.1
2,220 + +1.1
2,229 - -0.5
2,235 - -0.9
2,237 - -0.9
2,242 + +0.6
2,242 - -0.1
2,245 - +0.2
2,248 - -0.4
2,251 + +2.3
2,254 - -0.3
2,261 + +0.4
2,262 - +0.8
2,266 + +0.5
2,268 + +0.6
2,400 + 11538 mRNA_3170 0.21 -0.2
2,401 - 11538 mRNA_3170 0.21 -0.3
2,404 + 11538 mRNA_3170 0.22 -0.1
2,414 + 11538 mRNA_3170 0.23 -2.0
2,420 - 11538 mRNA_3170 0.23 -0.8
2,439 + 11538 mRNA_3170 0.25 -0.1
2,446 + 11538 mRNA_3170 0.26 -2.3
2,470 - 11538 mRNA_3170 0.28 -0.2
2,516 - 11538 mRNA_3170 0.32 -1.5

Or see this region's nucleotide sequence