Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3197

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11564 and 11565 are separated by 495 nucleotides11565 and 11566 are separated by 661 nucleotides mRNA_3196: 11564 - Hypothetical Protein, at 62,107 to 63,896 11564 mRNA_3197: 11565 - BLAST similar to An12g07160 [Aspergillus kawachii IFO 4308], at 64,392 to 66,116 11565 mRNA_3198: 11566 - K20176 SGSM3, MAP small G protein signaling modulator 3, at 66,778 to 71,121 11566

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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63,395 - 11564 mRNA_3196 0.72 +0.6
63,417 + 11564 mRNA_3196 0.73 -0.3
63,428 + 11564 mRNA_3196 0.74 +1.5
63,435 - 11564 mRNA_3196 0.74 -0.4
63,974 - +0.9
63,975 - +0.1
63,982 - +0.4
63,983 + +2.0
64,042 - +0.9
64,044 - +1.8
64,116 - -2.5
64,118 - +0.2
64,124 + -0.4
64,172 + +1.1
64,178 - +0.6
64,184 - -1.4
64,304 + +0.3
64,312 + +0.4
64,316 - +0.4
64,322 + +0.5
64,330 + +0.2
64,449 - +1.3
64,462 - +0.7
64,473 + +0.1
64,728 + 11565 mRNA_3197 0.19 +2.3
64,742 + 11565 mRNA_3197 0.20 +0.5
65,054 - 11565 mRNA_3197 0.38 +2.0
65,168 + 11565 mRNA_3197 0.45 +2.5
65,365 + 11565 mRNA_3197 0.56 -1.1
65,499 - 11565 mRNA_3197 0.64 +0.3
65,906 - 11565 mRNA_3197 0.88 +2.8
65,930 - 11565 mRNA_3197 0.89 -0.5
65,939 + 11565 mRNA_3197 0.90 +0.2
66,088 + +0.3
66,202 - +0.2
66,216 - +2.7
66,268 - -0.5
66,351 + -0.0
66,632 - +0.7
66,665 + -0.9
66,697 - +1.7
66,927 - +1.0

Or see this region's nucleotide sequence