Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3290

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11658 and 11659 are separated by 364 nucleotides mRNA_3290: 11658 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 304,969 to 308,540 11658 mRNA_3291: 11659 - BLAST expressed protein [Schizophyllum commune H4-8], at 308,905 to 310,428 11659

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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304,634 - +0.6
304,658 + +0.6
304,768 + +0.4
304,792 + -2.0
304,809 - -0.8
304,814 + -3.9
304,820 + +0.3
304,820 + +1.2
304,937 - +1.3
304,941 + -0.0
304,946 + +0.3
304,957 + +0.6
305,365 - 11658 mRNA_3290 0.11 +0.9
305,960 + 11658 mRNA_3290 0.28 -0.3
305,969 - 11658 mRNA_3290 0.28 +0.3
306,109 - 11658 mRNA_3290 0.32 +0.5
306,249 - 11658 mRNA_3290 0.36 +1.0
306,252 - 11658 mRNA_3290 0.36 -0.0
306,562 - 11658 mRNA_3290 0.45 +0.2
306,982 - 11658 mRNA_3290 0.56 -1.4
306,985 - 11658 mRNA_3290 0.56 +0.9
306,987 - 11658 mRNA_3290 0.56 -0.9
307,014 + 11658 mRNA_3290 0.57 +0.3
307,269 - 11658 mRNA_3290 0.64 +0.7
307,279 + 11658 mRNA_3290 0.65 -1.0
307,313 + 11658 mRNA_3290 0.66 +0.4
307,446 + 11658 mRNA_3290 0.69 -0.2
307,600 + 11658 mRNA_3290 0.74 +0.3
307,720 - 11658 mRNA_3290 0.77 -0.5
307,723 + 11658 mRNA_3290 0.77 -0.5
307,887 + 11658 mRNA_3290 0.82 -1.5
308,350 - +1.3
308,466 + -0.3
308,761 + -1.2
308,762 - -0.6
309,046 - +0.4
309,214 + 11659 mRNA_3291 0.20 -0.1
309,254 - 11659 mRNA_3291 0.23 +0.1
309,540 + 11659 mRNA_3291 0.42 +1.9

Or see this region's nucleotide sequence