Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3295

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11662 and 11663 are separated by 107 nucleotides11663 and 11664 are separated by 329 nucleotides mRNA_3294: 11662 - K20368 CNIH, ERV14 protein cornichon, at 319,706 to 321,575 11662 mRNA_3295: 11663 - K14324 SAP18 histone deacetylase complex subunit SAP18, at 321,683 to 322,724 11663 mRNA_3296: 11664 - Interpro PPR repeat family, at 323,054 to 326,094 11664

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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321,612 - -0.3
321,616 + -0.6
321,623 + -1.2
321,626 - -0.8
321,632 - +1.3
321,636 + -0.2
321,647 + -0.2
321,659 + -0.9
321,767 + +1.8
321,782 + +0.1
321,800 + 11663 mRNA_3295 0.11 +2.1
321,801 + 11663 mRNA_3295 0.11 -1.2
321,801 + 11663 mRNA_3295 0.11 -1.2
321,816 + 11663 mRNA_3295 0.13 +0.0
321,818 - 11663 mRNA_3295 0.13 -0.0
321,906 - 11663 mRNA_3295 0.21 -0.1
322,208 - 11663 mRNA_3295 0.50 -0.9
322,360 - 11663 mRNA_3295 0.65 -0.3
322,799 + -0.0
322,937 - +0.4
322,949 - -0.6
323,106 + -0.6
323,113 + +1.3

Or see this region's nucleotide sequence