Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3590

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11958 and 11959 are separated by 272 nucleotides mRNA_3590: 11958 - K02136 ATPeF1G, ATP5C1, ATP3 F-type H+-transporting ATPase subunit gamma, at 118,835 to 120,315 11958 mRNA_3591: 11959 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 120,588 to 122,766 11959

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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117,838 + +2.7
117,855 + +0.2
118,129 - +1.3
118,140 + -0.4
118,261 + -0.0
118,287 + +0.2
118,420 + -0.5
118,570 + +1.0
118,732 - +0.1
118,736 + +0.1
118,743 + +1.8
118,745 - -0.1
118,746 - +0.9
118,746 + +1.6
118,747 - -0.5
118,749 + +0.7
118,753 - -0.8
118,753 + -0.4
120,792 - +0.6
120,857 - 11959 mRNA_3591 0.12 -0.8
120,916 - 11959 mRNA_3591 0.15 +1.0
120,926 + 11959 mRNA_3591 0.16 -0.3
120,936 - 11959 mRNA_3591 0.16 -2.2
121,029 + 11959 mRNA_3591 0.20 +1.0

Or see this region's nucleotide sequence