Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3688

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12055 and 12056 are separated by 160 nucleotides12056 and 12057 are separated by 253 nucleotides mRNA_3687: 12055 - K14837 NOP12 nucleolar protein 12, at 349,923 to 352,122 12055 mRNA_3688: 12056 - KOG4285 Mitotic phosphoprotein, at 352,283 to 353,789 12056 mRNA_3689: 12057 - Hypothetical Protein, at 354,043 to 355,679 12057

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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351,489 - 12055 mRNA_3687 0.71 +0.6
351,950 + +0.0
352,197 - +0.0
352,213 - +1.5
352,228 + +0.2
352,407 + -0.3
352,533 - 12056 mRNA_3688 0.17 +0.4
352,671 - 12056 mRNA_3688 0.26 -1.2
352,798 + 12056 mRNA_3688 0.34 +0.4
353,504 + 12056 mRNA_3688 0.81 -2.0
353,799 + +0.7
353,845 - -0.3
353,865 + +0.3
353,876 - +0.8
353,877 - -0.8
353,877 - +0.9
353,883 - +0.2
353,884 - -0.2
353,889 - +0.1
353,890 - -0.5
353,892 + +0.5
353,892 + +0.6
353,896 + -0.5
353,897 - +1.9
353,903 - +0.0
354,062 + -2.6
354,197 + -0.2
354,452 + 12057 mRNA_3689 0.25 +1.6

Or see this region's nucleotide sequence