Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3707

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12074 and 12075 are separated by 626 nucleotides12075 and 12076 are separated by 327 nucleotides mRNA_3706: 12074 - KOG1550 Extracellular protein SEL-1 and related proteins, at 400,186 to 402,852 12074 mRNA_3707: 12075 - KOG2846 Predicted membrane protein, at 403,479 to 405,078 12075 mRNA_3708: 12076 - Hypothetical Protein, at 405,406 to 406,282 12076

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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403,035 - +1.6
403,077 + -1.0
403,079 + +1.6
403,163 + -0.8
403,204 + +0.3
403,215 - +0.1
403,226 + -0.3
403,322 + +1.0
403,344 - -1.5
403,350 - -1.2
403,357 - -0.1
403,358 - +0.7
403,359 - -0.3
403,383 + +0.3
403,384 + +2.0
403,529 - +0.5
405,145 + -0.0
405,150 - +2.3
405,159 + -1.4
405,179 + +0.6
405,290 - +0.5
405,296 - -0.4
405,322 - -0.5
405,519 + 12076 mRNA_3708 0.13 -2.1
405,721 + 12076 mRNA_3708 0.36 +2.2
405,768 + 12076 mRNA_3708 0.41 -1.4
405,898 + 12076 mRNA_3708 0.56 -0.3
405,907 - 12076 mRNA_3708 0.57 -0.5

Or see this region's nucleotide sequence