Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3829

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12196 and 12197 are separated by 729 nucleotides12197 and 12198 are separated by 691 nucleotides mRNA_3828: 12196 - Hypothetical Protein, at 682,813 to 683,280 12196 mRNA_3829: 12197 - KOG0519 Sensory transduction histidine kinase, at 684,010 to 687,695 12197 mRNA_3830: 12198 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 688,387 to 689,344 12198

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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683,108 - 12196 mRNA_3828 0.63 -0.3
683,128 - 12196 mRNA_3828 0.67 -0.1
683,139 - 12196 mRNA_3828 0.70 +1.0
683,143 - 12196 mRNA_3828 0.71 -0.1
683,149 + 12196 mRNA_3828 0.72 +0.8
683,152 - 12196 mRNA_3828 0.72 -0.0
683,156 + 12196 mRNA_3828 0.73 +1.3
683,166 - 12196 mRNA_3828 0.75 -0.4
683,166 - 12196 mRNA_3828 0.75 +1.7
683,167 - 12196 mRNA_3828 0.76 +0.6
683,168 + 12196 mRNA_3828 0.76 +0.9
683,170 - 12196 mRNA_3828 0.76 +1.3
683,172 + 12196 mRNA_3828 0.77 +4.1
683,173 - 12196 mRNA_3828 0.77 +0.8
683,174 + 12196 mRNA_3828 0.77 -0.5
683,179 + 12196 mRNA_3828 0.78 +0.3
683,190 + 12196 mRNA_3828 0.81 -1.0
683,196 - 12196 mRNA_3828 0.82 +0.5
683,201 + 12196 mRNA_3828 0.83 -0.8
683,205 + 12196 mRNA_3828 0.84 +2.5
683,205 + 12196 mRNA_3828 0.84 -0.1
683,213 + 12196 mRNA_3828 0.85 +0.4
683,217 - 12196 mRNA_3828 0.86 +1.1
683,218 + 12196 mRNA_3828 0.87 +0.2
683,219 - 12196 mRNA_3828 0.87 -0.7
683,226 + 12196 mRNA_3828 0.88 +0.8
683,230 - 12196 mRNA_3828 0.89 +0.3
683,233 + 12196 mRNA_3828 0.90 -0.1
683,236 + -0.2
683,264 + +2.0
683,268 + +1.8
683,331 - -0.6
683,366 - +1.3
683,366 + +0.3
683,367 - -0.1
683,376 - -1.0
683,379 - -0.1
683,380 - -1.7
683,383 + +0.5
683,385 - +0.8
683,402 - +2.9
683,409 - +0.1
683,410 + +0.1
683,410 - +0.3
683,410 - +0.3
683,411 - -1.4
683,414 + -1.3
683,417 - +1.6
683,418 + -2.1
683,419 - -0.4
683,421 - +0.5
683,423 + -0.0
683,438 - -0.3
683,444 - -0.1
683,448 - -1.1
683,461 + -0.4
683,463 - +0.7
683,465 + +1.1
683,467 - -2.3
683,469 - -1.5
683,475 - +1.6
683,476 - +0.2
683,478 + -2.3
683,480 - -0.1
683,485 + -0.2
683,504 + +0.8
683,507 - -0.4
683,508 + +0.4
683,510 + -0.9
683,511 - -0.9
683,515 + +0.2
683,525 + +0.9
683,600 - -0.6
683,626 - -0.6
683,638 + -2.1
683,692 + -1.5
683,792 + -1.1
683,792 + +0.6
683,794 + -0.2
683,797 - +0.9
683,802 - +0.5
683,813 + -0.3
683,821 - +1.1
683,824 - +0.5
683,950 + +1.5
684,110 - -0.9
684,557 + 12197 mRNA_3829 0.15 +1.9
684,920 + 12197 mRNA_3829 0.25 +0.1
684,980 + 12197 mRNA_3829 0.26 -1.1
685,012 - 12197 mRNA_3829 0.27 +0.6
685,220 - 12197 mRNA_3829 0.33 -0.7
685,268 - 12197 mRNA_3829 0.34 -1.4
685,372 + 12197 mRNA_3829 0.37 +0.4
685,658 + 12197 mRNA_3829 0.45 +2.8
686,869 - 12197 mRNA_3829 0.78 -0.1
687,168 + 12197 mRNA_3829 0.86 -0.7
687,182 + 12197 mRNA_3829 0.86 -0.6
687,200 + 12197 mRNA_3829 0.87 -1.0
687,202 - 12197 mRNA_3829 0.87 -0.3
687,220 + 12197 mRNA_3829 0.87 -2.4
687,241 - 12197 mRNA_3829 0.88 -1.4
687,247 - 12197 mRNA_3829 0.88 +0.7
687,950 + -0.5
688,305 + +0.7

Or see this region's nucleotide sequence