Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3882

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12249 and 12250 are separated by 337 nucleotides12250 and 12251 are separated by 702 nucleotides mRNA_3881: 12249 - Hypothetical Protein, at 814,368 to 814,862 12249 mRNA_3882: 12250 - Hypothetical Protein, at 815,200 to 816,864 12250 mRNA_3883: 12251 - K01784 galE, GALE UDP-glucose 4-epimerase, at 817,567 to 820,111 12251

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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814,304 + -0.9
814,305 - -1.0
814,316 + +0.9
814,317 - -0.6
814,320 - -0.4
814,333 + +0.3
814,334 + +0.2
814,356 + +0.4
814,386 - +2.0
814,398 - -0.6
814,402 - +0.9
814,405 + -0.7
814,421 - 12249 mRNA_3881 0.11 -0.7
814,422 + 12249 mRNA_3881 0.11 -1.4
814,472 - 12249 mRNA_3881 0.21 +2.2
814,477 + 12249 mRNA_3881 0.22 -1.3
814,478 - 12249 mRNA_3881 0.22 -0.4
814,492 - 12249 mRNA_3881 0.25 +0.4
814,492 + 12249 mRNA_3881 0.25 -0.8
814,499 + 12249 mRNA_3881 0.26 +0.4
814,506 - 12249 mRNA_3881 0.28 +0.8
814,529 - 12249 mRNA_3881 0.33 +1.7
814,539 + 12249 mRNA_3881 0.35 +0.5
814,582 - 12249 mRNA_3881 0.43 +0.9
814,651 - 12249 mRNA_3881 0.57 +0.3
814,799 - 12249 mRNA_3881 0.87 -0.9
814,806 - 12249 mRNA_3881 0.88 +0.1
814,806 - 12249 mRNA_3881 0.88 +0.5
814,942 + -0.9
814,943 - -0.6
814,951 - +0.3
814,973 + -0.6
815,124 - +0.0
815,731 + 12250 mRNA_3882 0.32 -0.3
815,856 + 12250 mRNA_3882 0.39 -0.0
816,006 + 12250 mRNA_3882 0.48 +0.5
816,016 - 12250 mRNA_3882 0.49 -0.4
816,560 - 12250 mRNA_3882 0.82 +0.1
816,591 - 12250 mRNA_3882 0.84 +0.1
816,601 + 12250 mRNA_3882 0.84 +0.6
816,851 + +0.6
816,857 + -1.3
816,865 + -0.9
816,904 - +0.5
816,915 - +1.0
817,016 + +0.7
817,037 - -0.4
817,040 + -0.8
817,041 - -0.2
817,054 - +1.3
817,060 - -0.8
817,063 + -1.3
817,068 + -1.5
817,068 + -0.1
817,104 + -1.1
817,111 + +0.8
817,112 - +0.6
817,115 + +0.5
817,133 + +0.2
817,141 + +1.1
817,161 - -0.1
817,168 + +0.8
817,169 - -1.0
817,179 + +1.1
817,183 - +0.4
817,195 - -1.0
817,196 + +0.9
817,201 + -1.5
817,274 - -0.1
817,344 + -0.6
817,351 + +0.5
817,372 + -0.1
817,383 + -0.1
817,489 - -0.6
817,501 - +0.4
817,503 + +0.2
817,512 + +0.7
817,518 - +0.1
817,623 - +1.2
817,646 + -0.1
817,651 + -1.0
817,660 + +0.4
817,694 + +0.4
817,831 - 12251 mRNA_3883 0.10 +0.2

Or see this region's nucleotide sequence