Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3930

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12297 and 12298 are separated by 366 nucleotides12298 and 12299 are separated by 462 nucleotides mRNA_3929: 12297 - BLAST TKL/TKL-ccin protein kinase [Mycena chlorophos], at 925,744 to 929,341 12297 mRNA_3930: 12298 - Hypothetical Protein, at 929,708 to 931,043 12298 mRNA_3931: 12299 - BLAST protein [Lichtheimia corymbifera JMRC-FSU-9682], at 931,506 to 935,642 12299

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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928,966 + 12297 mRNA_3929 0.90 +0.6
929,190 - -1.5
929,339 + +2.2
929,509 + +0.8
929,762 - -1.0
929,838 + +0.5
929,933 + 12298 mRNA_3930 0.17 -0.6
930,234 + 12298 mRNA_3930 0.39 +0.3
930,240 + 12298 mRNA_3930 0.40 -0.0
930,240 + 12298 mRNA_3930 0.40 -1.6
930,514 + 12298 mRNA_3930 0.60 +0.9
930,527 + 12298 mRNA_3930 0.61 +0.5
930,982 + -0.1
931,086 + -0.9
931,088 + +0.4
931,232 + -1.7
931,234 + +1.0
931,241 + +1.1
931,270 + +0.4
931,379 - +0.7
931,403 - +1.8
931,407 + +0.1
931,412 + -0.9
931,427 - +0.2
931,429 + +1.0
931,433 - +0.1
931,450 + +2.2
931,699 + -0.2
931,866 + -0.1
931,890 + +0.1
931,896 - -2.8
932,001 + 12299 mRNA_3931 0.12 -0.3

Or see this region's nucleotide sequence