Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3973

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12340 and 12341 are separated by 870 nucleotides12341 and 12342 are separated by 31 nucleotides mRNA_3972: 12340 - K11594 DDX3X, bel ATP-dependent RNA helicase DDX3X, at 1,029,366 to 1,031,642 12340 mRNA_3973: 12341 - HMMPfam-Flavin reductase like domain-PF01613,SMART-Flavin reductase like domain-SM00903,SUPERFAMILY--SSF50475, at 1,032,513 to 1,033,671 12341 mRNA_3974: 12342 - K02350 POLZ1, rev3 DNA polymerase zeta, at 1,033,703 to 1,040,837 12342

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,031,664 - -0.0
1,031,982 - +0.3
1,032,147 - +0.6
1,032,163 + +0.1
1,032,170 - +0.7
1,032,192 + +0.7
1,032,317 + -0.5
1,032,438 + +1.2
1,032,457 - +0.6
1,032,470 + +1.6
1,032,477 - -1.7
1,032,613 + -0.2
1,032,703 - 12341 mRNA_3973 0.16 +0.2
1,032,735 + 12341 mRNA_3973 0.19 +1.7
1,033,051 + 12341 mRNA_3973 0.46 -1.1
1,033,210 + 12341 mRNA_3973 0.60 -1.8
1,033,224 + 12341 mRNA_3973 0.61 +0.3
1,033,445 - 12341 mRNA_3973 0.80 +0.7
1,033,607 - +0.5
1,033,760 - +0.2
1,033,780 + -0.2
1,033,805 + -1.7
1,033,938 + +0.4
1,034,015 + +0.6
1,034,074 - +0.0
1,034,077 + +0.4
1,034,082 + +0.3
1,034,373 + +0.0

Or see this region's nucleotide sequence