Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3978

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12345 and 12346 are separated by 133 nucleotides12346 and 12347 are separated by 353 nucleotides mRNA_3977: 12345 - KOG4689 Predicted RNase, at 1,051,198 to 1,052,896 12345 mRNA_3978: 12346 - Hypothetical Protein, at 1,053,030 to 1,054,389 12346 mRNA_3979: 12347 - K07119 K07119 uncharacterized protein, at 1,054,743 to 1,056,048 12347

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,052,804 - -0.7
1,052,805 + -0.2
1,053,557 - 12346 mRNA_3978 0.39 +0.3
1,053,869 + 12346 mRNA_3978 0.62 +0.9
1,054,321 - +2.3
1,054,610 - +1.1
1,054,617 + +0.5
1,054,621 - -0.4
1,054,679 - -0.4
1,054,710 - -0.2
1,054,833 - +2.1
1,054,850 + +1.2

Or see this region's nucleotide sequence