Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4109

Experiment: Dropout Complete

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12476 and 12477 are separated by 418 nucleotides12477 and 12478 are separated by 496 nucleotides mRNA_4108: 12476 - HMMPfam-Aminotransferase class IV-PF01063,SUPERFAMILY--SSF56752, at 1,373,354 to 1,374,334 12476 mRNA_4109: 12477 - Hypothetical Protein, at 1,374,753 to 1,375,099 12477 mRNA_4110: 12478 - BLAST metal resistance protein ycf1 [Trichosporon asahii va..., at 1,375,596 to 1,376,142 12478

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
remove
1,374,084 + 12476 mRNA_4108 0.74 +0.2
1,374,158 - 12476 mRNA_4108 0.82 -0.1
1,374,160 + 12476 mRNA_4108 0.82 -0.3
1,374,426 - -0.2
1,374,563 + +1.6
1,374,739 + +1.2
1,374,890 + 12477 mRNA_4109 0.39 -0.6
1,375,003 + 12477 mRNA_4109 0.72 -2.0
1,375,033 + 12477 mRNA_4109 0.81 +1.7
1,375,504 - -2.7
1,376,002 - 12478 mRNA_4110 0.74 -1.4

Or see this region's nucleotide sequence