Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4197

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12564 and 12565 are separated by 378 nucleotides12565 and 12566 are separated by 49 nucleotides mRNA_4196: 12564 - K12343 SRD5A1 3-oxo-5-alpha-steroid 4-dehydrogenase 1, at 1,586,838 to 1,587,953 12564 mRNA_4197: 12565 - K00512 CYP17A steroid 17alpha-monooxygenase / 17alpha-hydroxyprogesterone deacetylase, at 1,588,332 to 1,590,437 12565 mRNA_4198: 12566 - K00166 BCKDHA, bkdA1 2-oxoisovalerate dehydrogenase E1 component alpha subunit, at 1,590,487 to 1,592,266 12566

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,587,458 - 12564 mRNA_4196 0.56 +0.4
1,587,754 - 12564 mRNA_4196 0.82 -0.1
1,587,901 + -2.5
1,587,921 + -1.7
1,588,050 - +2.4
1,588,052 - -2.1
1,588,054 - -0.4
1,588,072 + -0.0
1,588,187 + +0.7
1,588,198 - +1.1
1,588,224 - -1.1
1,589,064 + 12565 mRNA_4197 0.35 -0.1
1,589,184 - 12565 mRNA_4197 0.40 +2.0
1,589,387 - 12565 mRNA_4197 0.50 +3.2
1,589,660 - 12565 mRNA_4197 0.63 -1.7
1,590,082 - 12565 mRNA_4197 0.83 +0.2
1,590,103 + 12565 mRNA_4197 0.84 +0.0
1,590,385 - -0.9
1,591,418 + 12566 mRNA_4198 0.52 -0.3
1,591,427 - 12566 mRNA_4198 0.53 +0.5

Or see this region's nucleotide sequence