Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4205

Experiment: Dropout Complete

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12572 and 12573 are separated by 677 nucleotides12573 and 12574 are separated by 75 nucleotides12574 and 12575 overlap by 29 nucleotides mRNA_4204: 12572 - K15292 STXBP1, MUNC18-1 syntaxin-binding protein 1, at 1,605,498 to 1,608,617 12572 mRNA_4205: 12573 - K09276 YBX1, NSEP1 Y-box-binding protein 1, at 1,609,295 to 1,611,072 12573 mRNA_4206: 12574 - Hypothetical Protein, at 1,611,148 to 1,611,771 12574 mRNA_4207: 12575 - BLAST similar to An07g08470 [Aspergillus kawachii IFO 4308], at 1,611,743 to 1,613,207 12575

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
remove
1,608,695 - +1.0
1,608,946 - +0.6
1,608,982 + -1.6
1,609,156 - -0.4
1,609,891 - 12573 mRNA_4205 0.34 +1.0
1,609,988 + 12573 mRNA_4205 0.39 +0.2
1,609,995 - 12573 mRNA_4205 0.39 +2.1
1,610,301 - 12573 mRNA_4205 0.57 +2.5
1,610,744 - 12573 mRNA_4205 0.81 -0.3
1,610,875 - 12573 mRNA_4205 0.89 +1.1
1,610,879 + 12573 mRNA_4205 0.89 +1.1
1,610,899 - +1.0
1,610,910 + -0.2
1,610,925 - +1.8
1,611,086 - +0.8
1,611,197 - +1.0
1,611,220 - 12574 mRNA_4206 0.12 +0.5
1,611,236 + 12574 mRNA_4206 0.14 -1.3
1,611,336 + 12574 mRNA_4206 0.30 +0.6
1,611,374 - 12574 mRNA_4206 0.36 -1.4
1,611,378 + 12574 mRNA_4206 0.37 +0.6
1,611,510 - 12574 mRNA_4206 0.58 +0.8
1,611,518 + 12574 mRNA_4206 0.59 +0.0
1,611,519 - 12574 mRNA_4206 0.59 +1.5
1,611,524 + 12574 mRNA_4206 0.60 -0.6
1,611,526 - 12574 mRNA_4206 0.61 +0.2
1,611,542 - 12574 mRNA_4206 0.63 -0.6
1,611,641 + 12574 mRNA_4206 0.79 -0.8
1,611,647 + 12574 mRNA_4206 0.80 +0.3

Or see this region's nucleotide sequence