Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4212

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12579 and 12580 are separated by 285 nucleotides12580 and 12581 are separated by 133 nucleotides mRNA_4211: 12579 - Hypothetical Protein, at 1,622,119 to 1,623,170 12579 mRNA_4212: 12580 - KOG1968 Replication factor C, subunit RFC1 (large subunit), at 1,623,456 to 1,625,668 12580 mRNA_4213: 12581 - K01673 cynT, can carbonic anhydrase, at 1,625,802 to 1,627,146 12581

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,622,829 - 12579 mRNA_4211 0.67 -0.8
1,622,830 + 12579 mRNA_4211 0.68 -1.4
1,623,165 + +1.4
1,623,258 - -1.0
1,623,386 + +0.8
1,623,442 + +1.5
1,623,491 - -1.0
1,623,648 - +0.2
1,624,117 + 12580 mRNA_4212 0.30 +0.7
1,624,127 - 12580 mRNA_4212 0.30 +0.3
1,624,278 - 12580 mRNA_4212 0.37 -0.8
1,624,597 + 12580 mRNA_4212 0.52 +0.3
1,624,736 - 12580 mRNA_4212 0.58 +2.2
1,624,977 - 12580 mRNA_4212 0.69 +0.5
1,624,997 + 12580 mRNA_4212 0.70 +1.1
1,625,152 + 12580 mRNA_4212 0.77 +0.7
1,625,153 - 12580 mRNA_4212 0.77 -0.3
1,625,154 - 12580 mRNA_4212 0.77 +2.5
1,625,154 - 12580 mRNA_4212 0.77 +0.6
1,625,154 - 12580 mRNA_4212 0.77 -2.0
1,625,268 - 12580 mRNA_4212 0.82 +0.7
1,625,295 - 12580 mRNA_4212 0.83 +0.5
1,625,421 - 12580 mRNA_4212 0.89 +0.1
1,625,571 - +1.3
1,625,581 - +0.1
1,625,591 + -2.1
1,625,597 + +0.6
1,625,597 + +0.4
1,626,152 - 12581 mRNA_4213 0.26 +1.0

Or see this region's nucleotide sequence