Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4297

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12664 and 12665 are separated by 508 nucleotides12665 and 12666 are separated by 137 nucleotides mRNA_4296: 12664 - Hypothetical Protein, at 1,828,466 to 1,828,997 12664 mRNA_4297: 12665 - K01166 E3.1.27.1 ribonuclease T2, at 1,829,506 to 1,831,349 12665 mRNA_4298: 12666 - Hypothetical Protein, at 1,831,487 to 1,832,179 12666

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,828,511 - -0.9
1,828,673 + 12664 mRNA_4296 0.39 -0.8
1,828,680 + 12664 mRNA_4296 0.40 +0.5
1,828,690 - 12664 mRNA_4296 0.42 -0.3
1,828,696 - 12664 mRNA_4296 0.43 -0.1
1,828,701 + 12664 mRNA_4296 0.44 -1.4
1,828,711 + 12664 mRNA_4296 0.46 +0.5
1,828,842 + 12664 mRNA_4296 0.71 +0.4
1,828,975 + -0.1
1,829,000 - +1.4
1,829,105 - +1.0
1,829,108 + -0.1
1,829,109 - +0.5
1,829,110 + -1.6
1,829,115 + +0.1
1,829,138 - +0.4
1,829,150 + -3.0
1,829,154 + -0.6
1,829,159 - +0.6
1,829,159 + -0.5
1,829,163 + +0.4
1,829,180 - +0.3
1,829,197 - -0.0
1,829,211 - +1.1
1,829,212 - -0.6
1,829,224 - -0.8
1,829,240 - +0.6
1,829,241 + +0.3
1,829,251 - -0.3
1,829,259 - +0.6
1,829,261 + +1.3
1,829,267 + +1.4
1,829,323 + +0.2
1,829,327 + +0.2
1,829,328 + +1.4
1,829,333 - -2.2
1,829,359 + +1.1
1,829,404 - +0.3
1,829,415 - -0.3
1,829,423 - -0.1
1,829,434 + +1.4
1,829,516 + +1.6
1,829,557 + -0.4
1,829,685 - -0.5
1,829,711 - 12665 mRNA_4297 0.11 +1.8
1,829,844 - 12665 mRNA_4297 0.18 +0.4
1,829,997 - 12665 mRNA_4297 0.27 +1.0
1,830,130 - 12665 mRNA_4297 0.34 +0.2
1,830,436 + 12665 mRNA_4297 0.50 +1.8
1,831,059 - 12665 mRNA_4297 0.84 -3.5
1,831,295 + +0.1
1,831,470 - +0.2
1,831,501 - +0.4
1,831,516 - +0.5
1,831,951 - 12666 mRNA_4298 0.67 +0.1
1,832,243 + +0.5
1,832,251 + -0.3
1,832,268 - -0.5
1,832,275 + +0.5

Or see this region's nucleotide sequence