Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4392

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12759 and 12760 overlap by 4 nucleotides12760 and 12761 are separated by 892 nucleotides mRNA_4391: 12759 - Hypothetical Protein, at 79,565 to 80,188 12759 mRNA_4392: 12760 - KOG3069 Peroxisomal NUDIX hydrolase, at 80,185 to 81,389 12760 mRNA_4393: 12761 - K00029 E1.1.1.40, maeB malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+), at 82,282 to 84,844 12761

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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79,368 + +0.4
79,638 - 12759 mRNA_4391 0.12 +0.2
79,725 - 12759 mRNA_4391 0.26 +1.1
79,792 + 12759 mRNA_4391 0.36 -0.8
80,034 + 12759 mRNA_4391 0.75 +0.5
80,318 + 12760 mRNA_4392 0.11 +0.2
80,617 - 12760 mRNA_4392 0.36 -0.4
81,192 + 12760 mRNA_4392 0.84 +0.6
81,203 - 12760 mRNA_4392 0.84 +0.2
81,342 - +0.7
81,354 - +0.9
81,367 + +0.7
81,483 + +0.2
81,504 + -0.8
81,516 + +2.0
81,524 + -0.1
81,542 - -0.5
81,646 - -0.5
81,650 - +0.1
81,655 + +0.1
81,658 - -0.4
81,661 + -0.8
81,674 - -0.6
81,699 - +0.5
81,701 - +0.6
81,701 - +0.8
81,706 + +0.2
81,709 - +0.6
81,709 - +1.1
81,710 + -0.3
81,710 + -1.9
81,716 + +0.7
81,716 + -0.8
81,727 - +0.0
81,741 + +0.4
81,759 + +0.2
81,760 - +0.2
81,760 - +0.9
81,761 - -0.3
81,762 - +0.0
81,769 - -0.3
81,773 - -0.6
81,778 - -0.3
81,784 + +0.3
81,795 - +1.8
81,849 + +1.9
81,869 + +0.1
81,886 - +0.0
81,896 - +2.3
81,898 + +0.0
81,900 - +0.2
81,911 - +0.5
81,913 - +0.8
81,924 + -1.9
81,929 + -0.9
82,077 + -0.4
82,079 + +1.7
82,079 + -0.0
82,087 + +0.1
82,096 + -0.2
82,236 - +0.5
82,243 - +0.0
82,380 - +1.3

Or see this region's nucleotide sequence