Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4453

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12820 and 12821 are separated by 169 nucleotides12821 and 12822 are separated by 869 nucleotides mRNA_4452: 12820 - K13955 yogA zinc-binding alcohol dehydrogenase/oxidoreductase, at 217,165 to 218,716 12820 mRNA_4453: 12821 - KOG3855 Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis, at 218,886 to 222,303 12821 mRNA_4454: 12822 - K03380 E1.14.13.7 phenol 2-monooxygenase, at 223,173 to 226,550 12822

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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218,406 + 12820 mRNA_4452 0.80 +0.3
218,420 - 12820 mRNA_4452 0.81 +2.5
218,434 - 12820 mRNA_4452 0.82 -0.3
218,507 + 12820 mRNA_4452 0.86 +0.1
218,759 + -0.0
218,760 - +0.2
218,846 - -0.4
218,904 + -0.3
218,991 + +0.3
219,051 - -0.1
219,197 + -0.4
219,258 - 12821 mRNA_4453 0.11 -0.3
219,332 + 12821 mRNA_4453 0.13 -0.5
219,494 + 12821 mRNA_4453 0.18 +1.5
219,497 - 12821 mRNA_4453 0.18 +0.9
219,630 - 12821 mRNA_4453 0.22 +0.2
219,646 - 12821 mRNA_4453 0.22 +0.3
219,772 + 12821 mRNA_4453 0.26 -1.2
219,950 - 12821 mRNA_4453 0.31 +2.3
220,026 - 12821 mRNA_4453 0.33 +1.1
220,091 + 12821 mRNA_4453 0.35 +0.4
220,164 - 12821 mRNA_4453 0.37 -1.1
220,217 - 12821 mRNA_4453 0.39 -0.0
220,275 + 12821 mRNA_4453 0.41 +0.5
220,336 + 12821 mRNA_4453 0.42 +1.7
220,374 - 12821 mRNA_4453 0.44 +2.3
220,392 + 12821 mRNA_4453 0.44 +2.8
220,448 + 12821 mRNA_4453 0.46 +1.4
220,720 + 12821 mRNA_4453 0.54 +0.8
220,774 - 12821 mRNA_4453 0.55 +0.7
220,824 + 12821 mRNA_4453 0.57 +0.5
220,831 + 12821 mRNA_4453 0.57 +0.3
220,930 + 12821 mRNA_4453 0.60 -0.0
221,020 + 12821 mRNA_4453 0.62 +0.5
221,090 + 12821 mRNA_4453 0.64 -0.2
221,125 - 12821 mRNA_4453 0.66 +1.2
221,190 + 12821 mRNA_4453 0.67 +0.7
221,220 + 12821 mRNA_4453 0.68 +0.7
221,255 - 12821 mRNA_4453 0.69 +2.0
221,285 - 12821 mRNA_4453 0.70 +1.9
221,294 + 12821 mRNA_4453 0.70 +0.6
221,348 + 12821 mRNA_4453 0.72 +0.5
221,396 - 12821 mRNA_4453 0.73 +0.2
221,526 - 12821 mRNA_4453 0.77 -0.1
221,683 - 12821 mRNA_4453 0.82 +0.7
221,833 + 12821 mRNA_4453 0.86 +0.1
221,833 - 12821 mRNA_4453 0.86 -0.4
221,995 - -0.0
222,141 - -0.2
222,158 - +0.8
222,187 + +0.3
222,334 + -0.6
222,337 + +2.4
222,337 + +0.4
222,418 + -1.3
222,468 + +2.3
222,487 + +0.1
222,577 - +0.1
222,708 - -0.4
222,726 - +0.2
222,787 - +0.2
223,042 + +0.9
223,051 - -2.1
223,072 + +0.4
223,128 - +2.7
223,168 - -0.5
223,177 + +2.7
223,226 + -0.5

Or see this region's nucleotide sequence