Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4522

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12888 and 12889 are separated by 250 nucleotides12889 and 12890 are separated by 127 nucleotides12890 and 12891 are separated by 27 nucleotides mRNA_4520: 12888 - Hypothetical Protein, at 373,888 to 374,415 12888 mRNA_4521: 12889 - SUPERFAMILY--SSF117018, at 374,666 to 375,210 12889 mRNA_4522: 12890 - KOG0967 ATP-dependent DNA ligase I, at 375,338 to 377,134 12890 mRNA_4523: 12891 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 377,162 to 379,234 12891

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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374,405 - +1.3
374,409 - +0.2
374,431 + -0.1
374,536 + +0.4
374,552 + -1.8
374,563 - +2.2
374,647 + +1.0
374,943 - 12889 mRNA_4521 0.51 +1.4
374,944 + 12889 mRNA_4521 0.51 -1.5
374,967 - 12889 mRNA_4521 0.55 +0.1
375,137 + 12889 mRNA_4521 0.86 -0.3
375,293 + -0.7
375,840 + 12890 mRNA_4522 0.28 +0.1
376,000 - 12890 mRNA_4522 0.37 +1.0
376,264 + 12890 mRNA_4522 0.52 +0.2
376,323 - 12890 mRNA_4522 0.55 -1.0
377,259 - +0.4
378,019 + 12891 mRNA_4523 0.41 +1.7

Or see this region's nucleotide sequence