Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4532

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12899 and 12900 are separated by 329 nucleotides12900 and 12901 are separated by 200 nucleotides mRNA_4531: 12899 - K03671 trxA thioredoxin 1, at 395,175 to 396,195 12899 mRNA_4532: 12900 - K01247 alkA DNA-3-methyladenine glycosylase II, at 396,525 to 397,973 12900 mRNA_4533: 12901 - Hypothetical Protein, at 398,174 to 399,920 12901

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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395,952 + 12899 mRNA_4531 0.76 +0.9
396,307 + +2.1
396,465 - +0.6
396,480 + +0.9
396,492 - +0.7
396,586 + -1.5
396,612 - +0.7
396,654 + +2.6
396,777 + 12900 mRNA_4532 0.17 +0.3
396,879 - 12900 mRNA_4532 0.24 +0.4
397,128 - 12900 mRNA_4532 0.42 -0.4
397,232 - 12900 mRNA_4532 0.49 -0.7
397,492 + 12900 mRNA_4532 0.67 +1.7
397,505 + 12900 mRNA_4532 0.68 -1.0
397,760 - 12900 mRNA_4532 0.85 -0.8
398,361 - 12901 mRNA_4533 0.11 +2.0
398,489 - 12901 mRNA_4533 0.18 +0.4
398,655 - 12901 mRNA_4533 0.28 +0.6
398,703 - 12901 mRNA_4533 0.30 +1.4
398,770 + 12901 mRNA_4533 0.34 +0.6

Or see this region's nucleotide sequence