Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4555

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12922 and 12923 are separated by 639 nucleotides12923 and 12924 are separated by 163 nucleotides mRNA_4554: 12922 - K12585 DIS3, RRP44 exosome complex exonuclease DIS3/RRP44, at 447,758 to 451,562 12922 mRNA_4555: 12923 - KOG3855 Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis, at 452,202 to 455,003 12923 mRNA_4556: 12924 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 455,167 to 456,572 12924

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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451,614 + -0.4
451,616 + -0.0
451,661 + +0.5
451,740 - +0.1
451,742 - -0.1
451,757 + -1.2
451,784 + +1.3
451,842 - -0.3
451,854 - +0.3
451,857 - +0.3
451,860 - -0.5
451,933 + +0.6
451,933 - -3.0
451,935 - +0.7
451,935 + +0.4
451,938 - +0.8
451,940 + +1.4
451,947 - -1.0
451,947 - -0.1
451,966 - +0.5
451,973 + +2.1
451,975 + -0.5
451,976 + -0.1
451,977 + +0.5
452,094 - +0.6
452,150 + +1.0
452,248 - +1.6
452,427 - +0.3
452,664 - 12923 mRNA_4555 0.16 +0.4
452,799 - 12923 mRNA_4555 0.21 +2.2
452,867 - 12923 mRNA_4555 0.24 +0.2
453,302 - 12923 mRNA_4555 0.39 +2.2
453,446 - 12923 mRNA_4555 0.44 -0.4
453,448 - 12923 mRNA_4555 0.44 +0.4
453,451 + 12923 mRNA_4555 0.45 -0.7
453,597 + 12923 mRNA_4555 0.50 -0.4
453,625 + 12923 mRNA_4555 0.51 +0.5
453,720 + 12923 mRNA_4555 0.54 +0.1
453,854 - 12923 mRNA_4555 0.59 -0.7
453,951 + 12923 mRNA_4555 0.62 +0.8
453,963 + 12923 mRNA_4555 0.63 +0.3
454,725 - -1.0
455,273 - +1.7
455,294 + +0.9
455,786 + 12924 mRNA_4556 0.44 +0.8
455,964 - 12924 mRNA_4556 0.57 -0.8

Or see this region's nucleotide sequence