Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4658

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13025 and 13026 are separated by 444 nucleotides13026 and 13027 are separated by 752 nucleotides mRNA_4657: 13025 - Hypothetical Protein, at 704,703 to 705,380 13025 mRNA_4658: 13026 - Hypothetical Protein, at 705,825 to 708,792 13026 mRNA_4659: 13027 - KOG1134 Uncharacterized conserved protein, at 709,545 to 713,167 13027

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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704,848 + 13025 mRNA_4657 0.21 -1.1
705,128 - 13025 mRNA_4657 0.63 -1.7
705,134 + 13025 mRNA_4657 0.64 -2.1
705,148 - 13025 mRNA_4657 0.66 -0.3
705,160 + 13025 mRNA_4657 0.67 +0.6
705,565 - +0.2
705,580 - +0.7
705,580 + -0.8
705,584 + +0.7
705,585 + +1.9
705,585 + +0.1
705,586 - +0.2
705,618 + +2.2
705,626 + +0.1
705,705 + +0.6
705,709 - +0.5
705,724 - +2.0
705,746 + +0.2
705,752 - +0.1
705,804 - +0.7
705,842 - +1.5
705,865 + +0.0
705,865 + -0.3
705,873 + -0.5
706,034 - -0.1
706,139 + 13026 mRNA_4658 0.11 +1.8
706,158 - 13026 mRNA_4658 0.11 -0.1
706,177 + 13026 mRNA_4658 0.12 -0.5
706,328 + 13026 mRNA_4658 0.17 -0.9
706,577 - 13026 mRNA_4658 0.25 +0.7
706,588 - 13026 mRNA_4658 0.26 +0.8
706,604 + 13026 mRNA_4658 0.26 -0.6
706,611 + 13026 mRNA_4658 0.26 -0.3
706,622 + 13026 mRNA_4658 0.27 +0.3
706,625 + 13026 mRNA_4658 0.27 -0.1
706,627 + 13026 mRNA_4658 0.27 +0.6
706,743 + 13026 mRNA_4658 0.31 -0.2
706,753 + 13026 mRNA_4658 0.31 -0.5
706,755 + 13026 mRNA_4658 0.31 -0.3
706,756 - 13026 mRNA_4658 0.31 +0.5
706,759 - 13026 mRNA_4658 0.31 +1.0
706,777 - 13026 mRNA_4658 0.32 +0.2
706,777 - 13026 mRNA_4658 0.32 +1.9
706,911 + 13026 mRNA_4658 0.37 +0.7
706,912 - 13026 mRNA_4658 0.37 -0.1
706,913 - 13026 mRNA_4658 0.37 -0.2
706,941 + 13026 mRNA_4658 0.38 +0.1
707,055 + 13026 mRNA_4658 0.41 -0.2
707,064 + 13026 mRNA_4658 0.42 +0.4
707,064 + 13026 mRNA_4658 0.42 -0.2
707,066 + 13026 mRNA_4658 0.42 -1.1
707,388 - 13026 mRNA_4658 0.53 +1.6
707,518 + 13026 mRNA_4658 0.57 -0.9
707,627 - 13026 mRNA_4658 0.61 +0.0
707,659 + 13026 mRNA_4658 0.62 -0.5
707,788 + 13026 mRNA_4658 0.66 +1.4
707,950 + 13026 mRNA_4658 0.72 +0.9
708,063 - 13026 mRNA_4658 0.75 +1.4
708,068 - 13026 mRNA_4658 0.76 +0.1
708,238 - 13026 mRNA_4658 0.81 +0.8
708,269 + 13026 mRNA_4658 0.82 +1.1
708,360 + 13026 mRNA_4658 0.85 +1.4
708,378 - 13026 mRNA_4658 0.86 +0.5
708,512 - +0.9
708,527 + +0.8
708,664 + -1.0
708,686 + +0.2
708,763 - -0.6
708,859 - +0.6
708,962 + -2.3
708,971 - +0.4
708,971 - -1.9
708,977 + +0.0
708,982 + +0.2
708,984 - -0.5
708,993 - +0.4
708,995 + +1.2
708,995 - +0.5
708,995 - +1.4
708,996 - +0.4
708,998 + -0.9
709,007 + +0.8
709,011 + +0.6
709,022 + +0.3
709,028 + -0.6
709,047 + -2.6
709,055 + +1.6
709,061 - +1.5
709,062 + +1.8
709,077 - +1.9
709,077 - +0.1
709,079 + -0.3
709,082 - -0.1
709,104 - -2.1
709,115 + -0.6
709,117 + +0.1
709,119 - -0.2
709,120 + -2.0
709,125 - -0.5
709,128 + +0.5
709,137 - +2.1
709,146 + +1.2
709,187 - +0.3
709,192 + -1.1
709,207 + +1.0
709,207 - +0.3
709,214 + +2.5
709,219 - +1.3
709,219 + +1.3
709,224 + +0.3
709,226 + +0.0
709,230 + -0.8
709,231 - +0.2
709,254 - -1.3
709,256 - +1.6
709,258 + -0.1
709,259 + +0.1
709,261 - -0.7
709,261 - -0.7
709,267 + +0.9
709,267 - +1.5
709,268 + -0.8
709,268 + +0.4
709,269 + -0.0
709,275 + +1.2
709,278 - +1.4
709,279 - -0.8
709,288 - -0.2
709,289 + +0.5
709,289 + +1.4
709,294 + -0.2
709,295 - -2.4
709,305 + -0.1
709,306 - +0.5
709,307 - +0.1
709,310 - -1.2
709,311 - +2.8
709,312 + -1.5
709,336 + -0.0
709,419 - +0.2
709,452 - -0.4

Or see this region's nucleotide sequence